| School Name | Grades | Address | Zip | Phone | County | Type | District Name |
| Central Elementary School | K-6 | 933 E Avenue
National City, CA | 91950 | (619) 336-7400 | San Diego | public | National Elementary |
| El Toyon Elementary School | K-6 | 2000 East Division Street
National City, CA | 91950 | (619) 336-8000 | San Diego | public | National Elementary |
| Faithful Ambassadors Bible Baptist Academy | K-12 | 2432 East 18th Street
National City, CA | 91950 | (619) 434-2265 | San Diego | private | |
| Granger Junior High School | 5-9 | 2101 Granger Avenue
National City, CA | 91950 | (619) 472-6000 | San Diego | public | Sweetwater Union High |
| Integrity Charter School | K-8 | 701 National City Boulevard
National City, CA | 91950 | (619) 336-0808 | San Diego | charter | National Elementary |
| Ira Harbison School | K-6 | 3235 East Eighth Street
National City, CA | 91950 | (619) 336-8200 | San Diego | public | National Elementary |
| John A. Otis Elementary School | K-6 | 621 East 18th Street
National City, CA | 91950 | (619) 336-8800 | San Diego | public | National Elementary |
| Kimball School | K-6 | 302 West 18th Street
National City, CA | 91950 | (619) 336-8300 | San Diego | public | National Elementary |
| Las Palmas School | K-6 | 1900 East 18th Street
National City, CA | 91950 | (619) 336-8500 | San Diego | public | National Elementary |
| Lincoln Acres School | K-6 | 2200 Lanoitan Avenue
National City, CA | 91950 | (619) 336-8600 | San Diego | public | National Elementary |
| National City Middle School | 7-8 | 1701 D Avenue
National City, CA | 91950 | (619) 336-2600 | San Diego | public | Sweetwater Union High |
| Olivewood School | K-6 | 2505 F Avenue
National City, CA | 91950 | (619) 336-8700 | San Diego | public | National Elementary |
| Palmer Way School | K-6 | 2900 Palmer Street
National City, CA | 91950 | (619) 336-8900 | San Diego | public | National Elementary |
| Rancho de la Nacion School | K-6 | 1830 East Division Street
National City, CA | 91950 | (619) 336-8100 | San Diego | public | National Elementary |
| San Diego Academy | K-12 | 2800 East Fourth Street
National City, CA | 91950 | (619) 267-9550 | San Diego | private | |
| San Diego Christian Academy | 7-9, 11-12 | 2400 Euclid Ave
National City, CA | 91950 | (619) 267-5560 | San Diego | private | |
| San Diego Christian Learning Center | K-12 | 2400 Euclid Avenue
National City, CA | 91950 | (619) 267-5560 | San Diego | private | |
| Sweetwater High School | 8-12 | 2900 Highland Avenue
National City, CA | 91950 | (619) 474-9700 | San Diego | public | Sweetwater Union High |
