| School Name | Grades | Address | Zip | Phone | County | Type | District Name |
| Bahia Vista Elementary School | K-5 | 125 Bahia Way
San Rafael, CA | 94901 | (415) 485-2415 | Marin | public | San Rafael City Elementary School District |
| Brandeis Hillel Day School | K-8 | 180 N San Pedro Rd
San Rafael, CA | 94903 | (415) 472-1833 | Marin | private | |
| Coleman Elementary School | K-5 | 800 Belle Ave
San Rafael, CA | 94901 | (415) 485-2420 | Marin | public | San Rafael City Elementary School District |
| Dixie Elementary School | K-5 | 1175 Idylberry Drive
San Rafael, CA | 94903 | (415) 492-3730 | Marin | public | Dixie Elementary School District |
| Dunham Academy | K-8 | 1 St. Vincent Drive
San Rafael, CA | 94903 | (415) 491-4700 | Marin | private | |
| Glenwood Elementary School | K-5 | 25 Castlewood Dr
San Rafael, CA | 94901 | (415) 485-2430 | Marin | public | San Rafael City Elementary School District |
| James B. Davidson Middle School | 6-8 | 280 Woodland Ave
San Rafael, CA | 94901 | (415) 485-2400 | Marin | public | San Rafael City Elementary School District |
| Laurel Dell Elementary School | K-5 | 225 Woodland Ave
San Rafael, CA | 94901 | (415) 485-2317 | Marin | public | San Rafael City Elementary School District |
| Madrone High (Continuation) School | 11-12 | 185 Mission Ave
San Rafael, CA | 94901 | (415) 485-2435 | Marin | public | San Rafael City High School District |
| Marin Academic Center / Sunny Hills Services | K-8 | 755 Idylberry Road
San Rafael, CA | 94903 | (415) 492-9557 | Marin | private | |
| Marin Academy | 9-12 | 1600 Mission Ave
San Rafael, CA | 94901 | (415) 453-4550 | Marin | private | |
| Marin County Community School | 8-12 | 160-B North San Pedro Road
San Rafael, CA | 94903 | (415) 491-0581 | Marin | public | Marin County Office of Education |
| Marin County Rop School | n/a | 1111 Las Gallinas Avenue
San Rafael, CA | 94913 | (415) 499-5892 | Marin | public | Marin County Rop |
| Marin County Special Education School | K-12 | 1111 Las Gallinas Avenue
San Rafael, CA | 94913 | (415) 491-6612 | Marin | public | Marin County Office of Education |
| Marin Waldorf School | K-8 | 755 Idylberry Road
San Rafael, CA | 94903 | (415) 479-8190 | Marin | private | |
| Mary E. Silveira Elementary School | K-5 | 375 Blackstone Drive
San Rafael, CA | 94903 | (415) 492-3741 | Marin | public | Dixie Elementary School District |
| Miller Creek Middle School | 6-8 | 2255 Las Gallinas Avenue
San Rafael, CA | 94903 | (415) 492-3760 | Marin | public | Dixie Elementary School District |
| Montessori De Terra Linda | PK-6 | P.O. Box 6093
San Rafael, CA | 94903 | (415) 479-7373 | Marin | private | |
| Mulberry Classroom | K-11 | 70 Skyview Ter Bldg C
San Rafael, CA | 94903 | (415) 507-0537 | Marin | private | |
| Phoenix Academy | 9-12 | 160-B North San Pedro Road
San Rafael, CA | 94903 | (415) 491-0581 | Marin | charter | Marin County Office of Education |
| Real School LLC | 7-8 | 102 Eye St
San Rafael, CA | 94901 | (415) 383-7573 | Marin | private | |
| Saint Raphael School | K-8 | 1100 Fifth Avenue
San Rafael, CA | 94901 | (415) 454-4455 | Marin | private | |
| San Pedro Elementary School | K-5 | 498 Point San Pedro Rd
San Rafael, CA | 94901 | (415) 485-2450 | Marin | public | San Rafael City Elementary School District |
| San Rafael High School | 9-12 | 185 Mission Ave
San Rafael, CA | 94901 | (415) 485-2330 | Marin | public | San Rafael City High School District |
| Short Elementary School | n/a | 35 Marin Street
San Rafael, CA | 94901 | (415) 485-3793 | Marin | public | San Rafael City Elementary School District |
| St. Isabella School | K-8 | 1 Trinity Way
San Rafael, CA | 94903 | (415) 479-3727 | Marin | private | |
| St. Isabella School | K-8 | P.O. Box 6188
San Rafael, CA | 94903 | (415) 479-3727 | Marin | private | |
| St. Marks School | K-8 | 39 Trellis Drive
San Rafael, CA | 94903 | (415) 472-8000 | Marin | private | |
| Star Academy | 1-12 | 4470 Redwood Highway
San Rafael, CA | 94903 | (415) 456-8727 | Marin | private | |
| Sun Valley Elementary School | K-5 | 75 Happy Ln
San Rafael, CA | 94901 | (415) 485-2440 | Marin | public | San Rafael City Elementary School District |
| Terra Linda High School | 8-12 | 320 Nova Albion Way
San Rafael, CA | 94903 | (415) 492-3100 | Marin | public | San Rafael City High School District |
| Timothy Murphy School | 1-12 | 1 St. Vincent Drive
San Rafael, CA | 94903 | (415) 499-7616 | Marin | private | |
| Vallecito Elementary School | K-5 | 50 Nova Albion Way
San Rafael, CA | 94903 | (415) 492-3750 | Marin | public | Dixie Elementary School District |
| Venetia Valley Elementary School | K-8 | 177 North San Pedro Rd
San Rafael, CA | 94903 | (415) 492-3150 | Marin | public | San Rafael City Elementary School District |
