| School Name | Grades | Address | Zip | Phone | County | Type | District Name |
| Acequia Elementary School | PK-5 | 20504 4th St Acequia
Rupert, ID | 83350 | (208) 436-6985 | Minidoka | public | Minidoka County Joint District |
| Artec Charter School | 7-12 | 292 West 100 South
Rupert, ID | 83350 | (208) 436-4721 | Minidoka | charter | Minidoka County Joint District |
| East Minico Middle School | 6-8 | 1805 H St
Rupert, ID | 83350 | (208) 436-3178 | Minidoka | public | Minidoka County Joint District |
| Minico Senior High School | 9-12 | 292 West 100 South
Rupert, ID | 83350 | (208) 436-4721 | Minidoka | public | Minidoka County Joint District |
| Mount Harrison Junior/Senior High School | 7-12 | 310 10th St
Rupert, ID | 83350 | (208) 436-6252 | Minidoka | public | Minidoka County Joint District |
| Rupert Elementary School | PK-5 | 202 18th St
Rupert, ID | 83350 | (208) 436-9707 | Minidoka | public | Minidoka County Joint District |
| St. Nicholas School | PK-6 | P.O. Box 26
Rupert, ID | 83350 | (208) 436-6320 | Minidoka | private | |
