| School Name | Grades | Address | Zip | Phone | County | Type | District Name |
| Aberdeen Alternative - 12 | 6-12 | 640-9th Ave SW
Aberdeen, SD | 57401 | (605) 725-7800 | Brown | public | Aberdeen School District 06-1 |
| Aberdeen Christian High School | 9-12 | P.O. Box 548
Aberdeen, SD | 57402 | (605) 226-3125 | Brown | private | |
| Aberdeen Christian School | PK-12 | 1500 E Melgaard Rd
Aberdeen, SD | 57401 | (605) 225-2053 | Brown | private | |
| C C Lee Elementary - 05 | K-5 | 1900 North State St
Aberdeen, SD | 57401 | (605) 725-7500 | Brown | public | Aberdeen School District 06-1 |
| Central High School - 01 | 9-12 | 2200 South Roosevelt St
Aberdeen, SD | 57401 | (605) 725-8100 | Brown | public | Aberdeen School District 06-1 |
| Children's House of Montessori | n/a | 316 S Arch St
Aberdeen, SD | 57401 | (605) 225-6511 | Brown | private | |
| Dakota House | 7-9, 11-12 | 723 3rd Ave SE
Aberdeen, SD | 57401 | (605) 225-1013 | Brown | private | |
| Holgate Middle School - 02 | 6-8 | 2200 North Dakota St
Aberdeen, SD | 57401 | (605) 725-7700 | Brown | public | Aberdeen School District 06-1 |
| Hub Area Multi-District | n/a | 640 9th Ave SW
Aberdeen, SD | 57401 | (605) 725-7800 | Brown | public | Hub Area Multi-District |
| Lincoln Elementary - 08 | K-5 | 414 South 10th St
Aberdeen, SD | 57401 | (605) 725-7200 | Brown | public | Aberdeen School District 06-1 |
| May Overby Elementary - 09 | K-5 | 612 SE 14th Ave
Aberdeen, SD | 57401 | (605) 725-7300 | Brown | public | Aberdeen School District 06-1 |
| New Beginnings | 5-12 | 1601 Milwaukee Ave NE
Aberdeen, SD | 57401 | (605) 725-8100 | Brown | public | Aberdeen School District 06-1 |
| O M Tiffany Elementary - 11 | K-5 | 819 8th Ave NE
Aberdeen, SD | 57401 | (605) 725-7400 | Brown | public | Aberdeen School District 06-1 |
| Roncalli Elementary School | PK-2 | 419 First Avenue NE
Aberdeen, SD | 57401 | (605) 226-2100 | Brown | private | |
| Roncalli High School | 7-12 | 1400 N Dakota Street
Aberdeen, SD | 57401 | (605) 226-2100 | Brown | private | |
| Roncalli Junior/Senior High School | 7-12 | 1400 N Dakota St
Aberdeen, SD | 57401 | (605) 225-7440 | Brown | private | |
| Roncalli Middle School | 3-6 | 501 Third Ave. SE
Aberdeen, SD | 57401 | (605) 226-2100 | Brown | private | |
| Roncalli Primary School | PK-2 | 419 1st Ave NE
Aberdeen, SD | 57401 | (605) 225-3460 | Brown | private | |
| SD SB-VI Hi School | n/a | 423 17th Ave SE
Aberdeen, SD | 57401 | (605) 626-2580 | Brown | public | School District School for the Blind & Visually Impaired |
| SD SD-VI Elementary School | n/a | 423 17th Ave SE
Aberdeen, SD | 57401 | (605) 626-2580 | Brown | public | School District School for the Blind & Visually Impaired |
| Simmons Elementary - 10 | K-5 | 1500 South 3rd St
Aberdeen, SD | 57401 | (605) 725-7600 | Brown | public | Aberdeen School District 06-1 |
| Simmons Middle School - 03 | 6-8 | 1300 South 3rd St
Aberdeen, SD | 57401 | (605) 725-7900 | Brown | public | Aberdeen School District 06-1 |
| Trinity Lutheran School | PK-7 | 923 S Dakota St
Aberdeen, SD | 57401 | (605) 229-4697 | Brown | private | |
